[ensembl-dev] Best way to collect probesets (excluding all exon arrays)?

Alexander Pico apico at gladstone.ucsf.edu
Tue May 24 02:28:25 BST 2011


I'm looking for a better way to get probe features. I'm currently using
'fetch_all_by_linked_transcript_Gene()', but for species with all exon
arrays, this can take days...

Other than going in and deleting probesets from the funcgen databases (local
copies), how can I get around processing certain arrays, like the all exon
arrays, and just collect everything else?

Here's my current code snippet:

my $probe_adaptor = $registry->get_adaptor($species, "funcgen",
my $probe_features =
foreach my $pf (@$probe_features) {
    // do stuff

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