[ensembl-dev] sorting order for VEP

[Will McLaren]

Hi Andrea,

As long as you have variations on the same chromosome together and
sorted by position, the order of the chromosomes makes no difference.

Will

On Thursday, 12 May 2011, Andrea Edwards <edwardsa at cs.man.ac.uk> wrote:
> Hi
>
> The readme file for VEP recommends input files be sorted by chromosome for whole genome mode. Where do chrUn chromosomes come in the sorting order for this?
>
> thanks
>
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