[ensembl-dev] sorting order for VEP

Will McLaren wm2 at ebi.ac.uk
Thu May 12 08:18:05 BST 2011

Hi Andrea,

As long as you have variations on the same chromosome together and
sorted by position, the order of the chromosomes makes no difference.


On Thursday, 12 May 2011, Andrea Edwards <edwardsa at cs.man.ac.uk> wrote:
> Hi
> The readme file for VEP recommends input files be sorted by chromosome for whole genome mode. Where do chrUn chromosomes come in the sorting order for this?
> thanks
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> List admin (including subscribe/unsubscribe): http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/

More information about the Dev mailing list