[ensembl-dev] Getting ATG position for each transcript

srodriguez srodriguez at jouy.inra.fr
Thu May 12 09:29:38 BST 2011

Dear Ensembl team,

We need to get the sequences, 1000 bp upstream of the ATG, from all  
transcripts of cow genome using Ensembl database.

We have been making different tests by using Ensembl API, but, we do  
not always get the ATG position (please find attached test script).

Could you please tell me a way to get to the position of the ATG for  
each transcript?

Thank you very much in advance.

Best regards,


Sabrina Rodriguez
Département de Génétique animale
Unité GABI
Domaine de Vilvert
78532 Jouy en josas

+33 (0) 1 34 65 29 53
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