[ensembl-dev] help to retrieve the genomic sequence for 28S rRNA

[Nathan Johnson]

Hi Bin

It seems there was a temporary glitch with the Ensembl search. Searchign for '28s' on human will now bring you back many more than just the MRPS genes.

Nath
On 4 May 2011, at 13:05, Nathan Johnson wrote:

> Hi Bin
> 
> It seems the 28S subunit is not indexed well as a protein annotation. What I think you are looking for is the MRPS genes. They are clustered in various locations across several chromosomes.
> 
> http://www.ensembl.org/Homo_sapiens/Lucene/Details?species=Homo_sapiens;idx=Gene;end=62;q=MRPS*
> 
> Look in the protein family view for evidence.
> 
> 
> 
> Thanks
> 
> Nath
> 
> On 29 Apr 2011, at 23:38, Liu,Bin wrote:
> 
>> Hi,
>>                 I was trying to retrieve the chromosome location of 28S rRNA from Human and Mouse genome. It was surprised that I couldn't find it.
>> I wonder if the 28S rRNA was annotated in both of the genomes although 28S rRNA is the well known non-coding RNA. Thanks for the help.
>>  
>>  
>> Bin Liu, Ph.D.
>> Department of Genetics
>> The University of Texas M. D. Anderson Cancer Center
>> 1515 Holcombe Blvd
>> Houston, TX 77030
>> Phone:  713-792-0878
>> Email: bliu1 at mdanderson.org
>> Room No: S13.8316A
>>  
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> 
> Nathan Johnson
> Senior Scientific Programmer
> Ensembl Regulation
> European Bioinformatics Institute
> Wellcome Trust Genome Campus
> Hinxton
> Cambridge CB10 1SD
> 
> http://www.ensembl.info/
> http://twitter.com/#!/ensembl
> 
> 
> 
> 
> 
> 
> _______________________________________________
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Nathan Johnson
Senior Scientific Programmer
Ensembl Regulation
European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD

http://www.ensembl.info/
http://twitter.com/#!/ensembl






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