[ensembl-dev] Minimal installation for Core databases

[William Spooner]

I would take everything from here;
ftp://ftp.ensembl.org/pub/current_mysql/homo_sapiens_core_62_37g/

You could omit some of the feature tables, such as
marker_* 
*_align_feature*
qtl_*
misc_*
prediction_*
repeat_*
simple_feature.txt.gz
karyotype.txt.gz
ditag_*
density_*

The stable ID mapping tables and unmapped object tables may or may not be of interest, depending on the level of detail of gene IDs and xrefs you're interested in.

Will

On 24 Jun 2011, at 16:23, Sébastien Moretti wrote:

> Hi
> 
> I would like to set a minimal local ensembl MySQL installation to be able to request gene name, gene description, gene xref, transcripts, translations and gene identifier with the API.
> 
> Could you tell me what is the MySQL dump tables required to do that ?
> 
> Regards
> 
> -- 
> Sébastien Moretti
> SIB Vital-IT EMBnet, Quartier Sorge - Genopode
> CH-1015 Lausanne, Switzerland
> Tel.: +41 (21) 692 4079/4221
> http://www.vital-it.ch/ http://ch.embnet.org/ http://myhits.vital-it.ch/
> 
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--
William Spooner
whs at eaglegenomics.com
http://www.eaglegenomics.com