[ensembl-dev] Minimal installation for Core databases

Sébastien Moretti sebastien.moretti at unil.ch
Wed Jun 29 13:42:08 BST 2011


Hi Will

This will make our local ensembl installation lighter.

I will test it.
Thanks

> I would take everything from here;
> ftp://ftp.ensembl.org/pub/current_mysql/homo_sapiens_core_62_37g/
>
> You could omit some of the feature tables, such as
> marker_*
> *_align_feature*
> qtl_*
> misc_*
> prediction_*
> repeat_*
> simple_feature.txt.gz
> karyotype.txt.gz
> ditag_*
> density_*
>
> The stable ID mapping tables and unmapped object tables may or may not be of interest, depending on the level of detail of gene IDs and xrefs you're interested in.
>
> Will
>
> On 24 Jun 2011, at 16:23, Sébastien Moretti wrote:
>
>> Hi
>>
>> I would like to set a minimal local ensembl MySQL installation to be able to request gene name, gene description, gene xref, transcripts, translations and gene identifier with the API.
>>
>> Could you tell me what is the MySQL dump tables required to do that ?
>>
>> Regards

-- 
Sébastien Moretti
Department of Ecology and Evolution,
Biophore, University of Lausanne,
CH-1015 Lausanne, Switzerland
Tel.: +41 (21) 692 4221/4079
http://bioinfo.unil.ch/




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