[ensembl-dev] [SPAM] - Re: Transcript variation alleles - Email found in subject

Oliver, Gavin gavin.oliver at almacgroup.com
Wed Feb 2 15:21:48 GMT 2011

I'm using transcriptvariation->variation_feature->allele_string



From: wmclaren at gmail.com [mailto:wmclaren at gmail.com] On Behalf Of Will
Sent: 02 February 2011 15:20
To: Graham Ritchie
Cc: Oliver, Gavin; dev at ensembl.org
Subject: [SPAM] - Re: [ensembl-dev] Transcript variation alleles - Email
found in subject


Hi Gavin,


What method and object type are you using to get the alleles? It's not
clear from your email.





On 2 February 2011 15:11, Graham Ritchie <grsr at ebi.ac.uk> wrote:

Hi Gavin,

The alleles of a transcript variation always represent the genomic base



Ensembl variation

On 2 Feb 2011, at 15:02, Oliver, Gavin wrote:

> Hi,
> When I pull transcript variation alleles via the API, does the allele
shown (e.g. A/T) represent the genomic base change, or the
transcriptomic one?
> Gavin
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