[ensembl-dev] [SPAM] - Re: Transcript variation alleles - Email found in subject

[Oliver, Gavin]

I'm using transcriptvariation->variation_feature->allele_string

 

________________________________

From: wmclaren at gmail.com [mailto:wmclaren at gmail.com] On Behalf Of Will
McLaren
Sent: 02 February 2011 15:20
To: Graham Ritchie
Cc: Oliver, Gavin; dev at ensembl.org
Subject: [SPAM] - Re: [ensembl-dev] Transcript variation alleles - Email
found in subject

 

Hi Gavin,

 

What method and object type are you using to get the alleles? It's not
clear from your email.

 

Thanks

 

Will

On 2 February 2011 15:11, Graham Ritchie <grsr at ebi.ac.uk> wrote:

Hi Gavin,

The alleles of a transcript variation always represent the genomic base
change.

Cheers,

Graham

Ensembl variation



On 2 Feb 2011, at 15:02, Oliver, Gavin wrote:

> Hi,
>
> When I pull transcript variation alleles via the API, does the allele
shown (e.g. A/T) represent the genomic base change, or the
transcriptomic one?
>
> Gavin
>
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