[ensembl-dev] Transcript variation alleles

Will McLaren wm2 at ebi.ac.uk
Wed Feb 2 15:20:04 GMT 2011


Hi Gavin,

What method and object type are you using to get the alleles? It's not clear
from your email.

Thanks

Will

On 2 February 2011 15:11, Graham Ritchie <grsr at ebi.ac.uk> wrote:

> Hi Gavin,
>
> The alleles of a transcript variation always represent the genomic base
> change.
>
> Cheers,
>
> Graham
>
> Ensembl variation
>
>
> On 2 Feb 2011, at 15:02, Oliver, Gavin wrote:
>
> > Hi,
> >
> > When I pull transcript variation alleles via the API, does the allele
> shown (e.g. A/T) represent the genomic base change, or the transcriptomic
> one?
> >
> > Gavin
> >
> >
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