[ensembl-dev] new snp effect predictor script
Ewan Birney
birney at ebi.ac.uk
Sat Apr 23 09:55:57 BST 2011
Andrea - I think the Polyphen/sift scores are provided for all coding
variations.
A definitive answer will come from Will/Fiona - be aware that it's the
Easter weekend here in the UK and there is a strange alignment of bank
holidays
over these weeks, so the response might take some time.
On 23 Apr 2011, at 03:09, Andrea Edwards wrote:
> Hello
>
> Looking at the new version of the snp effect predictor script and
> TranscriptVariationAdaptor module, is it correct to say you only
> return polyphen and sift scores for existing variations? the readme
> file for the script does not say you cannot perform polyphen and
> sift on novel variations but the code appears to return undef if a
> score does not exist in the database.
>
> thanks
>
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