[ensembl-dev] Bad data in MySQL dumps

[Fedor Gusev]

Basically, it says:
 gzip: result_feature.txt: No space left on device
And i have >100Gb left on this partition.

gunzip -l reports this:
       compressed        uncompressed  ratio uncompressed_name
       11304575360          1712567965 -560.1% result_feature.txt
Seems kinda weird.

On Fri, Apr 8, 2011 at 4:42 PM, Nathan Johnson <njohnson at ebi.ac.uk> wrote:
> Hi Fedor
>
> Can you be more specific when you say 'fails to unpack'? What happens exactly?
>
> I suspect what you are seeing is that it is taking a long time to unpack as these files are particularly large.  Also, please see the README file for more information on how to handle the result_feature imports, as they require some non-standard parameters to handle the BLOB data.
>
> Thanks
>
>
> Nath
>
> On 3 Apr 2011, at 12:14, Fedor Gusev wrote:
>
>> Hello everyone.
>>
>> I have some problems with file
>>  ftp://ftp.ensembl.org/pub/release-61/mysql/homo_sapiens_funcgen_61_37f/result_feature.txt.gz
>>
>> It is not present in CHECKSUMS file and fails to unpack. Can you
>> please check on this?
>>
>> --
>> Kind regards,
>> Fedor Gusev.
>>
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>
> Nathan Johnson
> Senior Scientific Programmer
> Ensembl Regulation
> European Bioinformatics Institute
> Wellcome Trust Genome Campus
> Hinxton
> Cambridge CB10 1SD
>
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>



-- 
Kind regards,
Fedor Gusev.