[ensembl-dev] Repeat regions

Oliver, Gavin gavin.oliver at almacgroup.com
Thu Apr 7 11:47:27 BST 2011


Thanks a lot Will.

Out of curiosity is there a quick/easy way of determining if said
transcript has any other areas of high homology within the same genome?



-----Original Message-----
From: William Spooner [mailto:whs at eaglegenomics.com] 
Sent: 07 April 2011 11:44
To: Oliver, Gavin
Cc: dev
Subject: Re: [ensembl-dev] Repeat regions

Hi Gavin,

$gene->feature_Slice->get_all_RepeatFeatures.
or $exon->feature_Slice->get_all_RepeatFeatures to just hit exons.

Will


On 7 Apr 2011, at 11:38, Oliver, Gavin wrote:

> Hi all,
>  
> Given an Ensembl transcript object, what is the easiest way to get
information about repetitive elements within it?
>  
> Thanks in advance,
>  
> Gavin
>  
> _______________________________________________
> Dev mailing list
> Dev at ensembl.org
> http://lists.ensembl.org/mailman/listinfo/dev

--
William Spooner
whs at eaglegenomics.com
http://www.eaglegenomics.com




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