[ensembl-dev] error retrieving annotated features from Ensembl Regulation 61

[Fiona Nielsen]

I am trying to extract Ensembl data related to the annotated features
in the Ensembl Regulation database.

The function to access regulatory features is executed with no error:

    # set database adaptor
    my $efg_db       = $registry->get_DBAdaptor('Human', 'funcgen');

    # retrieve feature set from database
    my $fset_adaptor = $registry->get_adaptor('Human','funcgen','featureset');

    # retrieve all regulatory FeatureSets
    # 'annotated', 'regulatory' or 'supporting'
    my @rf_fsets = @{$fset_adaptor->fetch_all_by_feature_class('regulatory')};

    foreach my $rf_fset(@rf_fsets){
 	print $rf_fset->name.",";
    }

but when trying to access the annotated features, I get an error message
    # set database adaptor
    my $efg_db       = $registry->get_DBAdaptor('Human', 'funcgen');

    # retrieve feature set from database
    my $fset_adaptor = $registry->get_adaptor('Human','funcgen','featureset');

    # retrieve all regulatory FeatureSets
    # 'annotated', 'regulatory' or 'supporting'
    my @rf_fsets = @{$fset_adaptor->fetch_all_by_feature_class('annotated')};

DBD::mysql::st execute failed: Unknown column 'ct.gender' in 'field
list' at ../ensembl/modules//Bio/EnsEMBL/DBSQL/BaseAdaptor.pm line
477.


I tried to have a look in BioMart, and if I in BioMart select "Homo
Sapiens features" and "annotated features", I am only served empty
rows in the result.
Are these data sets not available or is there some bug in the API to
retrieve them?

Any comments and suggestions are welcome.

Thanks,

-Fiona-