[ensembl-dev] Ensembl Pipeline: General.pm

[Jan Vogel]

Hi Felix, 

can you send us the exact error message pls ? If you try to repeatmask lot's of sequence you might consider 
running the analysis on multiple computers / in a farm environment, as it's quite compute expensive.....

if'd suggest to keep all binaries in a central place, ie /usr/local/ensembl/bin

Jan 

On Apr 4, 2011, at 1:44 AM, Felix Bemm wrote:

> Hi,
> 
> I am trying to set up a local ensembl pipeline. Currently I am going
> through the quick start guide. So far I created all needed dbs. Using
> the test_RunnableDB I get an error (Couldn't require
> Bio/EnsEMBL/Analysis/RunnableDB/RepeatMasker). I suppose this happens
> because of wrong settings in the General.pm. How should the BIN_DIR be
> structured? Should I copy all files from RepeatMasker, genscan or
> wublast in one dir or should I use symlinks? I am little helpless here!
> Thx...
> 
> Best regards
> Felix
> 
> -- 
> Felix Bemm
> Department of Bioinformatics
> University of Würzburg, Germany
> Tel: +49 931 - 31 83696
> Fax: +49 931 - 31 84552
> felix.bemm at uni-wuerzburg.de
> 
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