[ensembl-dev] installing perl api and its dependency on bioperl
Will Spooner
whs at eaglegenomics.com
Thu Oct 28 18:10:39 BST 2010
Hi Chris,
I recall it having something to do with the Bio::SearchIO::_eventHandler and register_factory methods. I should really have a go at fixing it; I think that this will be easier on the Ensembl side than the BioPerl side. We would also like to see Ensembl use an up-to-date BioPerl.
Will
On 28 Oct 2010, at 17:34, Chris Fields wrote:
> Anyone know specifically what that dependency is? I can start possibly looking at it from the BioPerl end.
>
> chris
>
> On Oct 28, 2010, at 11:07 AM, Will Spooner wrote:
>
>> The latest bioperl version works fine with the Ensembl APIs. There is one remaining dependancy on BioPerl 1.2.3 in the Ensembl code, specifically the BlastView result parsing.
>>
>> Will
>>
>> On 28 Oct 2010, at 13:57, Andrea Edwards wrote:
>>
>>> Hi
>>>
>>> Just a quick question - on the installation instructions for ensembl perl api it says to install bioperl 1.2.3. Does it have to be that specific version of bioperl or anything later than that?
>>>
>>> thanks
>>>
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>>
>> --
>> William Spooner
>> whs at eaglegenomics.com
>> http://www.eaglegenomics.com
>>
>>
>>
>>
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>
--
William Spooner
whs at eaglegenomics.com
http://www.eaglegenomics.com
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