[ensembl-dev] Installing local copy of emsembl
Patrick Meidl
pmeidl at cemm.oeaw.ac.at
Wed Oct 27 11:50:12 BST 2010
On Wed Oct 27 11:06:57 BST 2010, Ewan Birney <birney at ebi.ac.uk> wrote:
> More importantly, you don't have to use the Registry to get a
> DBAdaptor. A DBAdaptor can be attached to a specific database directly
> without the Register. Check out the documentation on (I think....)
>
> Bio::EnsEMBL::DBSQL::DBAdaptor
you could also use Bio::EnsEBML::Registry->load_all($config_file) to
load the Registry from a configuration file, which allows you to
configure arbitrary database names. this used to be the standard way of
initialising the Registry before load_registry_from_db() was introduced.
see here for more information (especially config file syntax):
http://www.ensembl.org/info/docs/api/registry.html
HTH
patrick
--
Patrick Meidl, Mag.
Bioinformatician
Ce-M-M-
Research Centre for Molecular Medicine
of the Austrian Academy of Science
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Vienna, Austria
room 02.205
phone +43 1 40160 70016
email pmeidl at cemm.oeaw.ac.at
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