[ensembl-dev] [ensemblgenomes] protein_tree_node.MYD not found

Dan Staines dstaines at ebi.ac.uk
Sun Oct 24 16:54:52 BST 2010

that looks like a temporary problem with the underlying filesystem - 
these sometimes happen when there is heavy database load. Are you using 
the public instance on mysql.ebi.ac.uk:4157? If so, I just checked and 
can query this table without problem, so you might like to try again.


On 10/24/2010 04:48 PM, Giuseppe Gallone wrote:
> Hi,
> I'm querying some Plasmodium falciparum genes to retrieve orthologues
> using the pan homology db. I'm on API V.59. My script is currently
> failing with the following dump:
> DBD::mysql::st execute failed: File
> './ensembl_compara_pan_homology_6_59/protein_tree_node.MYD' not found
> (Errcode: 24) at /home/
> giuseppe/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/DBSQL/NestedSetAdaptor.pm
> line 572
> Any ideas?
> Thanks in advance,
> G.

Dan Staines, PhD               Ensembl Genomes Technical Coordinator
EMBL-EBI                       Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/

More information about the Dev mailing list