[ensembl-dev] [ensemblgenomes] protein_tree_node.MYD not found

Giuseppe Gallone G.Gallone at sms.ed.ac.uk
Mon Oct 25 09:56:09 BST 2010


thanks. I will try again and let you know how it goes.


On 24/10/10 16:54, Dan Staines wrote:
> that looks like a temporary problem with the underlying filesystem -
> these sometimes happen when there is heavy database load. Are you using
> the public instance on mysql.ebi.ac.uk:4157? If so, I just checked and
> can query this table without problem, so you might like to try again.
> Dan.
> On 10/24/2010 04:48 PM, Giuseppe Gallone wrote:
>> Hi,
>> I'm querying some Plasmodium falciparum genes to retrieve orthologues
>> using the pan homology db. I'm on API V.59. My script is currently
>> failing with the following dump:
>> DBD::mysql::st execute failed: File
>> './ensembl_compara_pan_homology_6_59/protein_tree_node.MYD' not found
>> (Errcode: 24) at /home/
>> giuseppe/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/DBSQL/NestedSetAdaptor.pm
>> line 572
>> Any ideas?
>> Thanks in advance,
>> G.

The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.

More information about the Dev mailing list