[ensembl-dev] [SPAM] - Re: Annotation discrepancy - Bayesian Filter detected spam

[Oliver, Gavin]

I am only using the human database.

Did you see the list of further examples I sent?

I'm pretty certain some investigation is required.

Gavin

-----Original Message-----
From: ianlongden at gmail.com [mailto:ianlongden at gmail.com] On Behalf Of ian Longden
Sent: 19 November 2010 12:46
To: Oliver, Gavin
Cc: dev
Subject: [SPAM] - Re: [ensembl-dev] Annotation discrepancy - Bayesian Filter detected spam

When you do the search do you have the species defined as the Entrez
GeneID is different for different species:-

i.e. in human HSPE1 is 3336
but in cow     HSPE1 is 281833

For rhesus monkey it is 100425423

Does this explain it or do i need to do some more investigating.

-Ian Longden

On Fri, Nov 19, 2010 at 10:29 AM, Oliver, Gavin
<gavin.oliver at almacgroup.com> wrote:
> Hi all,
>
>
>
> I have been using Ensembl human for internal annotation of microarrays.
>
>
>
> Yesterday someone did a search for Entrez Gene ID 3336 in our database.  It
> returned no hits.
>
>
>
> When they searched with the Gene symbol for this ID (HSPE1), they got 5 hits
> but the Entrez ID associated with the gene was (100132346 and not 3336 as
> would be expected).
>
>
>
> I ran a search for 100132346 against the Ensembl genome browser and it
> brings back 2 genes on 2 different chromosomes.
>
>
>
> Can someone explain what might be happening here?
>
>
>
> Best,
>
>
>
> Gavin
>
>
>
>
>
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