[ensembl-dev] Annotation discrepancy
ian Longden
ianl at ebi.ac.uk
Fri Nov 19 12:45:36 GMT 2010
When you do the search do you have the species defined as the Entrez
GeneID is different for different species:-
i.e. in human HSPE1 is 3336
but in cow HSPE1 is 281833
For rhesus monkey it is 100425423
Does this explain it or do i need to do some more investigating.
-Ian Longden
On Fri, Nov 19, 2010 at 10:29 AM, Oliver, Gavin
<gavin.oliver at almacgroup.com> wrote:
> Hi all,
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> I have been using Ensembl human for internal annotation of microarrays.
>
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> Yesterday someone did a search for Entrez Gene ID 3336 in our database. It
> returned no hits.
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> When they searched with the Gene symbol for this ID (HSPE1), they got 5 hits
> but the Entrez ID associated with the gene was (100132346 and not 3336 as
> would be expected).
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> I ran a search for 100132346 against the Ensembl genome browser and it
> brings back 2 genes on 2 different chromosomes.
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> Can someone explain what might be happening here?
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> Best,
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> Gavin
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