[ensembl-dev] repeatmasker version information of the masked genome sequences

Pengcheng Yang pengchy at gmail.com
Thu Dec 16 01:47:20 GMT 2010


Hi Andy,

Thanks for your reply.
Is there a summary file, in GFF format, of the repeats in the genome 
sequences?  From the summary GFF files, we can get the statistics that 
how many are every kind of repeats.

Regards,
Pengcheng


On 2010-12-15 0:22, Andy Yates wrote:
> Dear Pengcheng,
>
> Much like UCSC we in EnsemblGenomes use the latest version of RepeatMasker (open-3.2.9).
>
> Regards,
>
> Andy
>
> On 14 Dec 2010, at 16:16, Pengcheng Yang wrote:
>
>> Hi,
>>
>> I can not find the RepeatMasker Version information in the ensemblgenomes.org,  as UCSC Genome Browser supplied http://genome.ucsc.edu/FAQ/FAQdownloads.html#download16.
>>
>> Thanks,
>>
>> Pengcheng
>>
>> _______________________________________________
>> Dev mailing list
>> Dev at ensembl.org
>> http://lists.ensembl.org/mailman/listinfo/dev





More information about the Dev mailing list