[ensembl-dev] Request for help on TranslationAdaptor

Andreas Kahari ak at ebi.ac.uk
Mon Aug 9 09:34:14 BST 2010


Thanks Alison,

This has now been fix on the HEAD branch and on the 59 release branch.

Andreas


On Fri, Aug 06, 2010 at 11:23:38AM +0800, Alison Lee wrote:
> Hi Jan,
> 
> Thanks for the info. We upgraded to HEAD code, ran the pipeline, and
> found an error in TranslationAdaptor Revision 1.47. The sql statement
> in fetch_all_alternative_by_Transcript should be "JOIN transcript t ON
> (tl.transcript_id = t.transcript_id) " instead of
> "JOIN transcript t USING (transcript_id) ".
> 
> Alison
> 
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> 

-- 
Andreas Kähäri, Ensembl Software Developer
European Bioinformatics Institute (EMBL-EBI)
Wellcome Trust Genome Campus, Hinxton
Cambridge CB10 1SD, United Kingdom




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