[ensembl-dev] Re： Re： Re： Can't connect to ensembl database

[Gautier Koscielny]

Hello Grace,

Please, could you send your PERL5LIB configuration (echo $PERL5LIB).

rgds,

-Gautier-


On 05/08/2010 10:55, Grace Cheng wrote:
> Hi Abel,
>
> Here is what I get:
>
> [GraceCheng at bxiew Desktop]$ DBD::mysql::db selectall_arrayref failed: 
> fetch() without execute() at 
> /src/ensembl/modules/Bio/EnsEMBL/Registry.pm line 1418.
> Will only load v58 databases
> Bio::EnsEMBL::Variation::DBSQL::DBAdaptor module not found so 
> variation databases will be ignored if found
> Bio::EnsEMBL::Funcgen::DBSQL::DBAdaptor module not found so functional 
> genomics databases will be ignored if found
> No Compara databases found
> No ancestral database found
> No GO database found
>
> Thanks,
> Grace
>
> ------------------------------------------------------------------------
> *寄件人﹕* Abel Ureta-Vidal <abel at eaglegenomics.com>
> *收件人﹕* Grace Cheng <himwo at yahoo.com.hk>
> *副本(CC)* dev ensembl <dev at ensembl.org>
> *傳送日期﹕* 2010/8/5 (四) 3:11:46 AM
> *主題：* Re: [ensembl-dev] Re： Re： Can't connect to ensembl database
>
> What do you get with -verbose?
>
> Abel
>
> On 4 Aug 2010, at 19:49, Grace Cheng wrote:
>
>> Hi Abel,
>>
>>
>> Thanks for your help. I get the things below:
>>
>>
>> [GraceCheng at bxiew Desktop]$ grep API_VERSION 
>> /src/ensembl/modules/Bio/EnsEMBL/Registry.pm
>> my $API_VERSION = 58;
>>   return $API_VERSION;
>>   if ( $database_version != $API_VERSION ) {
>>         $API_VERSION, $database_version
>>
>> That mean I am in the right version, v58? I am really stuck in this 
>> point........
>>
>>
>> Grace
>>
>>
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>
> *__*
> *Abel Ureta-Vidal*
> *Eagle Genomics Ltd* | E: abel at eaglegenomics.com 
> <mailto:abel at eaglegenomics.com>
> http://www.eaglegenomics.com <http://www.eaglegenomics.com/>
>
>
>
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>    


-- 
Best Regards/Cordialement/Mit freundlichen Grüßen
Gautier Koscielny, Ph.D.
phone: +44 (0)1223 494 650
EMBL Outstation - The European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton CB10 1SD
UK