[ensembl-dev] Re： Re： Re： Can't connect to ensembl database

[Grace Cheng]

Hi Abel,


Here is what I get:

[GraceCheng at bxiew Desktop]$ DBD::mysql::db selectall_arrayref failed: fetch() 
without execute() at /src/ensembl/modules/Bio/EnsEMBL/Registry.pm line 1418.
Will only load v58 databases
Bio::EnsEMBL::Variation::DBSQL::DBAdaptor module not found so variation 
databases will be ignored if found
Bio::EnsEMBL::Funcgen::DBSQL::DBAdaptor module not found so functional genomics 
databases will be ignored if found
No Compara databases found
No ancestral database found
No GO database found 


Thanks,
Grace



________________________________
寄件人﹕ Abel Ureta-Vidal <abel at eaglegenomics.com>
收件人﹕ Grace Cheng <himwo at yahoo.com.hk>
副本(CC) dev ensembl <dev at ensembl.org>
傳送日期﹕ 2010/8/5 (四) 3:11:46 AM
主題： Re: [ensembl-dev]  Re： Re： Can't connect to ensembl database

What do you get with -verbose?

Abel


On 4 Aug 2010, at 19:49, Grace Cheng wrote:

Hi Abel,
> 
>
>Thanks for your help. I get the things below:
> 
>
>[GraceCheng at bxiew Desktop]$ grep API_VERSION 
>/src/ensembl/modules/Bio/EnsEMBL/Registry.pm
>my $API_VERSION = 58;
>  return $API_VERSION;
>  if ( $database_version != $API_VERSION ) {
>        $API_VERSION, $database_version
> 
>That mean I am in the right version, v58? I am really stuck in this 
>point........
> 
>
>Grace
> _______________________________________________
>Dev mailing list
>Dev at ensembl.org
>http://lists.ensembl.org/mailman/listinfo/dev
>

__
Abel Ureta-Vidal
Eagle Genomics Ltd | E: abel at eaglegenomics.com
http://www.eaglegenomics.com 



      
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