[ensembl-dev] [Ensembl #791073] Mix of Ovis aries strains

[Sebastien Moretti]

Thanks, waiting for your answer about the FTP.

Does it mean the reference breed is Texel, and not Rambouillet, at Ensembl?
The reference at RefSeq is now Rambouillet ARS-UI_Ramb_v3.0/GCF_016772045.2
https://www.ncbi.nlm.nih.gov/datasets/genome/?taxon=9940

Best
Sébastien

On 06.02.2025 10:30, Jorge Batista da Rocha via RT wrote:
> 
> <URL: http://helpdesk.ebi.ac.uk/Ticket/Display.html?id=791073 >
> 
> Dear Sébastien,
> 
> Hope you are well! There have been some issues with the 113 release related
> files due to sheep texel getting switched up with ramboulliet when pipelines
> called for sheep - ovis aries.
> 
> We know this affects VEP for sheep, we have a known bug for this- https://
> www.ensembl.info/known-bugs/ensembl-113/
> 
> We are exploring the data on FTP and will get back to you, but until then, the
> workaround will be to use the files from the 112 release. https://
> ftp.ensembl.org/pub/release-112/json/ovis_aries/
> 
> Thanks and best regards
> 
> Jorge
> 
>> Sébastien

--
Sébastien Moretti
Staff Scientist
Department of Ecology and Evolution,
Biophore, University of Lausanne,
CH-1015 Lausanne, Switzerland
Tel.: +41 (21) 692 4221
https://bioinfo.unil.ch/ https://www.bgee.org/ https://selectome.org/