[ensembl-dev] question ovis aries

[Alessia Virzì]

Hi Leanne,

Thank you so much for this info. Looking forward. Do you know if MT genes will be better annotated? In this version, we have this situation:
NC_001941.1     RefSeq  gene    2745    3699    .       +       .       ID=gene-KEF53_p13;Dbxref=GeneID:808249;Name=ND1;gbkey=Gene;gene=ND1;gene_biotype=protein_coding;locus_tag=KEF53_p13

Where ID=gene-KEF53_p13 is present instead of the name ND1 (as well as for many other genes).

Thank you again

Alessia

From: Dev <dev-bounces at ensembl.org> On Behalf Of Leanne Haggerty
Sent: 04 November 2024 12:04
To: Ensembl developers list <dev at ensembl.org>
Cc: helpdesk at ensembl.org
Subject: Re: [ensembl-dev] question ovis aries

Hi Alessia

The Ensembl annotation of ARS-UI_Ramb_v3.0 is not available yet, and so the browser displays the older version, ARS-UI_Ramb_v2. Annotation of the latest assembly is in progress and data will be available via our new website, beta.ensembl.org<http://beta.ensembl.org> before the end of the year. In the meantime, we provide annotation data for 21 sheep assemblies, including many different breeds, in case this is useful for you:

Species selector<https://beta.ensembl.org/species-selector/search?query=sheep>
beta.ensembl.org<https://beta.ensembl.org/species-selector/search?query=sheep>
[cid:image001.png at 01DB2ECE.F3217B40]<https://beta.ensembl.org/species-selector/search?query=sheep>


I hope this helps
All the best
Leanne


On 4 Nov 2024, at 10:46, Alessia Virzì <alessia.virzi at kuleuven.be<mailto:alessia.virzi at kuleuven.be>> wrote:

Hello,

I would like to know why in the ensemble website the ovis aries genome Ovis_aries_rambouillet - Ensembl genome browser 113<https://www.ensembl.org/Ovis_aries_rambouillet/Info/Index> refer to the version: ARS-UI-Ramb-v2
While in the NIH NCBI website the reccomanded version is the ARS-UI_Ramb_v3.0https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_016772045.2/

Any insides would be great!

Thanks

Alessia
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