[ensembl-dev] Dev Digest, Vol 57, Issue 1

[Jamie Allen]

Hi Wallace,

Thanks for your query. Yes you’re correct we didn’t move the genomes to v2.1.1, as we were soon moving to the v3 set which has far more genome samples included. Is there a specific variant you’re looking at that is lacking population frequency information that is only in the gnomADv2.1.1 genomes set? 

Cheers,
Jamie.

> On 14 Feb 2024, at 12:00, dev-request at ensembl.org wrote:
> 
> Send Dev mailing list submissions to
> 	dev at ensembl.org
> 
> To subscribe or unsubscribe via the World Wide Web, visit
> 	http://mail.ensembl.org/mailman/listinfo/dev_ensembl.org
> or, via email, send a message with subject or body 'help' to
> 	dev-request at ensembl.org
> 
> You can reach the person managing the list at
> 	dev-owner at ensembl.org
> 
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of Dev digest..."
> 
> 
> Today's Topics:
> 
>   1. gnomAD v2 genomes AF not included in VEP result or Ensembl
>      website (Wallace Ko)
> 
> 
> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Wed, 14 Feb 2024 18:43:50 +0800
> From: Wallace Ko <myko at l3-bioinfo.com>
> To: Ensembl developers list <dev at ensembl.org>
> Subject: [ensembl-dev] gnomAD v2 genomes AF not included in VEP result
> 	or Ensembl website
> Message-ID:
> 	<CA+DTqFeFeNTzNM6=nVY82-YeheXuRev9547y0crxJntF=LiQ4A at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
> 
> Hi,
> 
> I notice that both VEP result and Ensembl website only include exomes AF
> from gnomAD v2.1.1. Could you explain why those from genomes of v2.1.1 are
> not included?
> 
> Regards,
> Wallace Ko
> -------------- next part --------------
> An HTML attachment was scrubbed...
> URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20240214/a8982028/attachment-0001.html>
> 
> ------------------------------
> 
> Subject: Digest Footer
> 
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info: https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org
> Ensembl Blog: http://www.ensembl.info/
> 
> 
> ------------------------------
> 
> End of Dev Digest, Vol 57, Issue 1
> **********************************