[ensembl-dev] No UK10K variation data from REST API

[Nuno Agostinho]

Hi Hielke,

There is indeed a difference between the populations for which we show frequencies in REST and the Ensembl variation site. Currently, our REST endpoints only return frequencies for the populations mentioned in http://rest.ensembl.org/info/variation/populations/homo_sapiens?content-type=application/json (which does not include UK10K frequency data).

We are considering adding all frequencies available in the variation page to the variation REST endpoint for consistency. I will reply back to you when I have more news on this subject.

Thanks for your suggestion!

Best regards,
Nuno

> On 20 Jul 2023, at 16:02, Hielke <hielkewalinga at gmail.com> wrote:
> 
> Hello dev at ensembl.org,
> 
> I see on the website that there is variation data from the UK10K
> project (e.g. rs699):
> 
> https://www.ensembl.org/Homo_sapiens/Variation/Population?r=1:230845294-230846294;v=rs699;vdb=variation;vf=94
> 
> But when I get this from the REST API, there is no UK10K population:
> 
> http://rest.ensembl.org/variation/human/rs699?pops=1
> 
> What is going wrong?
> 
> Sincerely,
> Hielke
> 
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info: https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org
> Ensembl Blog: http://www.ensembl.info/

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20230725/0162eeb4/attachment.html>