[ensembl-dev] ***SPAM*** RE: REVEL Pluging in VEP 110

[Bin Xu]

Dear Ensembl Team,



I am looking at the human genome size in your web page below, but it does not specify the base pairs 3,099,750,718 as either male, or female, or average of male and female.

The same are the other species. As I know the female genome size is about 1.6% more than male.

Could you please help to update the data by presenting female and male genome size respectively.



https://useast.ensembl.org/Homo_sapiens/Info/Annotation

[cid:image001.png at 01DA29D1.7F949AC0]



Best regards,





Bin Xu, PhD

Vice President

O: 732-783-7398 | C: 267-318-5247

bin.xu at accurantbiotech.com<mailto:bin.xu at accurantbiotech.com>

259 Prospect Plains Rd, Cranbury, NJ 08512











-----Original Message-----
From: Dev <dev-bounces at ensembl.org> On Behalf Of Diana Lemos
Sent: Friday, December 8, 2023 4:44 AM
To: Souhila Amanzougarene <souhila.amanzougarene at cnrs.fr>
Cc: Ensembl developers list <dev at ensembl.org>
Subject: Re: [ensembl-dev] REVEL Pluging in VEP 110



Hi,



The plugin was updated after release 108 which could have caused differences in the output.



Can you please send an example of your input file with variants that were expected to have a REVEL score but didn't with version 110?



Also, when did you download the REVEL file?









On 08/12/2023 08:15, Souhila Amanzougarene wrote:

> Dear Ensembl Team,

>

> I'm using VEP tool version 110 to annotate a VCF file (hg38) with the

> REVEL plugin. I processed it by running the following command :

>

> ./vep -i variations.vcf --assembly GRCh38 --plugin

> REVEL,file=/path/to/revel/data.tsv.gz

>

> This command runs without any errors, but the REVEL column is empty in

> the annotated VCF.

>

> I attempted to run VEP 110 using the REVEL.pm file from VEP 108, and

> it worked, I now have scores in the REVEL column.

>

>

> Thak you for your assisatnce !

>

> Best regards,

>



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