[ensembl-dev] REVEL Pluging in VEP 110

Souhila Amanzougarene souhila.amanzougarene at cnrs.fr
Fri Dec 8 08:15:18 GMT 2023


Dear Ensembl Team,

I'm using VEP tool version 110 to annotate a VCF file (hg38) with the 
REVEL plugin. I processed it by running the following command :

./vep -i variations.vcf --assembly GRCh38 --plugin 
REVEL,file=/path/to/revel/data.tsv.gz

This command runs without any errors, but the REVEL column is empty in 
the annotated VCF.

I attempted to run VEP 110 using the REVEL.pm file from VEP 108, and it 
worked, I now have scores in the REVEL column.


Thak you for your assisatnce !

Best regards,

-- 
Souhila Amanzougarene




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