[ensembl-dev] REVEL Pluging in VEP 110
Souhila Amanzougarene
souhila.amanzougarene at cnrs.fr
Fri Dec 8 08:15:18 GMT 2023
Dear Ensembl Team,
I'm using VEP tool version 110 to annotate a VCF file (hg38) with the
REVEL plugin. I processed it by running the following command :
./vep -i variations.vcf --assembly GRCh38 --plugin
REVEL,file=/path/to/revel/data.tsv.gz
This command runs without any errors, but the REVEL column is empty in
the annotated VCF.
I attempted to run VEP 110 using the REVEL.pm file from VEP 108, and it
worked, I now have scores in the REVEL column.
Thak you for your assisatnce !
Best regards,
--
Souhila Amanzougarene
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