[ensembl-dev] docker image request for REST server

Duarte Molha duartemolha at gmail.com
Tue Apr 25 11:16:14 BST 2023


I have tried unsuccessfully to create a ENSEMBL REST server docker
container to run locally on my locally installed ensembl database.

I tried to follow the instructions here:

https://github.com/Ensembl/ensembl-rest/wiki/REST-Installation-and-Development

It has not worked.

The links for Catalyst are broken:

   - http://wiki.catalystframework.org/wiki/installation (basic)
   - http://wiki.catalystframework.org/wiki/installingcatalyst (advanced)

I am able to install it by using CPAN, but it might be part of why I have
been unsuccessful.

I forked a github project that tries to do this:

https://github.com/genomehubs/ensembl-rest-docker

and modified it to work with human species...

 https://github.com/duartemolha/ensembl-rest-docker

But it still is not working

Either some hints on what is wrong with my code or (better yet) a pre-build
version of your rest server containerised would be greatly appreciated

The main reason I am doing this is because I am developing some apps that I
will want to do many (fast) queries and I do not want to rely on ensembl
servers to get this as I will be rate limited pretty sharpish :)

Many thanks

Duarte
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