[ensembl-dev] missing Motif features file for v107 - Homo_sapiens.GRCh38.motif_features.gff.gz

[Julie Sullivan]

That would be perfect. :) thanks so much!

On Wed, 26 Oct 2022 at 13:18, Garth Ilsley <ilsley at ebi.ac.uk> wrote:

> Hi Julie,
>
> Indeed, you noticed quickly!
>
> No problem, we can generate a tabix file and add it to the ftp. Would it
> be OK if we aimed for the end of the week?
>
> Garth
>
> On 2022-10-26 12:38, Julie Sullivan wrote:
> > I see the file is back in
> >
> https://ftp.ensembl.org/pub/release-107/regulation/homo_sapiens/MotifFeatures/
> >
> > Thanks so much!
> >
> > Can I be a difficult customer and also ask for the tabix file also?
> > (the TBI file).
> >
> > "Homo_sapiens.GRCh38.motif_features.gff.gz.tbi"
> >
> > Apologies, I should have asked for this file in my first email, but I
> > forgot I needed both! Thanks!!
> >
> > On Mon, 24 Oct 2022 at 14:16, Julie Sullivan
> > <julie.sullivan at gmail.com> wrote:
> >
> >> Hi Garth!
> >>
> >> Yes, that's the file I need! I will check back in a week.
> >>
> >> Thanks so much!! :)
> >>
> >> On Mon, 24 Oct 2022 at 12:34, <ilsley at ebi.ac.uk> wrote:
> >>
> >>> Dear Julie,
> >>>
> >>> Thank you for letting us know. The file
> >>> homo_sapiens.GRCh38.motif_features.gff.gz is missing from this
> >>> directory, and we plan to restore it for 107. Unfortunately, we
> >>> need to regenerate this file, which will take about a week. The
> >>> file for 108 is also missing (a known issue), but this one will be
> >>> fixed more quickly, hopefully by tomorrow.
> >>>
> >>> Is homo_sapiens.GRCh38.motif_features.gff.gz the file you are
> >>> looking for? (We aren’t planning on placing the chromosome
> >>> specific files there, as these duplicate information from the main
> >>> file, and we aim to avoid unnecessary disk storage.)
> >>>
> >>> Best wishes,
> >>>
> >>> Garth
> >>>
> >>> From: Dev <dev-bounces at ensembl.org> On Behalf Of Julie Sullivan
> >>> Sent: 24 October 2022 11:52
> >>> To: dev at ensembl.org
> >>> Subject: [ensembl-dev] missing Motif features file for v107 -
> >>> Homo_sapiens.GRCh38.motif_features.gff.gz
> >>>
> >>> I see all the files in the previous release:
> >>>
> >>>
> >>
> >
> https://ftp.ensembl.org/pub/release-106/regulation/homo_sapiens/MotifFeatures/
> >>>
> >>> But I don't see them in version 107:
> >>>
> >>>
> >>
> >
> https://ftp.ensembl.org/pub/release-107/regulation/homo_sapiens/MotifFeatures/
> >>> [1]
> >>>
> >>> Have they been moved? If not, can they be restored?
> >>>
> >>> Thanks!
> >>>
> >>> Julie_______________________________________________
> >>> Dev mailing list    Dev at ensembl.org
> >>> Posting guidelines and subscribe/unsubscribe info:
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> >>> Ensembl Blog: http://www.ensembl.info/
> >
> >
> > Links:
> > ------
> > [1]
> >
> https://ftp.ensembl.org/pub/release-107/regulation/homo_sapiens/MotifFeatures/
> > _______________________________________________
> > Dev mailing list    Dev at ensembl.org
> > Posting guidelines and subscribe/unsubscribe info:
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> > Ensembl Blog: http://www.ensembl.info/
>
> _______________________________________________
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