[ensembl-dev] missing Motif features file for v107 - Homo_sapiens.GRCh38.motif_features.gff.gz

[Julie Sullivan]

I see the file is back in
https://ftp.ensembl.org/pub/release-107/regulation/homo_sapiens/MotifFeatures/

Thanks so much!

Can I be a difficult customer and also ask for the tabix file also? (the
TBI file).

"Homo_sapiens.GRCh38.motif_features.gff.gz.tbi"

Apologies, I should have asked for this file in my first email, but I
forgot I needed both! Thanks!!

On Mon, 24 Oct 2022 at 14:16, Julie Sullivan <julie.sullivan at gmail.com>
wrote:

> Hi Garth!
>
> Yes, that's the file I need! I will check back in a week.
>
> Thanks so much!! :)
>
> On Mon, 24 Oct 2022 at 12:34, <ilsley at ebi.ac.uk> wrote:
>
>> Dear Julie,
>>
>>
>>
>> Thank you for letting us know. The file
>> homo_sapiens.GRCh38.motif_features.gff.gz is missing from this directory,
>> and we plan to restore it for 107. Unfortunately, we need to regenerate
>> this file, which will take about a week. The file for 108 is also missing
>> (a known issue), but this one will be fixed more quickly, hopefully by
>> tomorrow.
>>
>>
>>
>> Is homo_sapiens.GRCh38.motif_features.gff.gz the file you are looking
>> for? (We aren’t planning on placing the chromosome specific files there, as
>> these duplicate information from the main file, and we aim to avoid
>> unnecessary disk storage.)
>>
>>
>>
>> Best wishes,
>>
>> Garth
>>
>>
>>
>> *From:* Dev <dev-bounces at ensembl.org> *On Behalf Of *Julie Sullivan
>> *Sent:* 24 October 2022 11:52
>> *To:* dev at ensembl.org
>> *Subject:* [ensembl-dev] missing Motif features file for v107 -
>> Homo_sapiens.GRCh38.motif_features.gff.gz
>>
>>
>>
>> I see all the files in the previous release:
>>
>>
>>
>>
>> https://ftp.ensembl.org/pub/release-106/regulation/homo_sapiens/MotifFeatures/
>>
>>
>>
>> But I don't see them in version 107:
>>
>>
>>
>>
>> https://ftp.ensembl.org/pub/release-107/regulation/homo_sapiens/MotifFeatures/
>>
>>
>>
>> Have they been moved? If not, can they be restored?
>>
>>
>>
>> Thanks!
>>
>> Julie
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>
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