[ensembl-dev] duplicate entries in ftp file ensembl vertebrates

[Marc Chakiachvili]

Hi Rizwan, sorry to hear that,

Can you be more specifi and tell me which file is causing the
duplicates? Are they all in the same file you download, or across
multiple?

Thanks for your inputs. 

Kind regards, 

Marc 

On Tue, 2022-11-01 at 11:47 +0000, Rizwan Ishtiaq wrote:
> Hi team,
> It seems you have duplicate entries in ensembl vertebrates files
> which we are downloading from FTP
> locationftp.ensembl.org:/pub/rapid-release/species/{{name}}/*/geneset
> /*/*genes.embl.gz
> There are total 61,891 duplicate accessions. Some problematic
> protein_id examples are following
>  * ENSCCRP00000037442
>  * ENSCCRP00000031589
>  * ENSCCRP00000015336
>  * ENSCCRP00000036697
>  * ENSCCRP00000080301
>  * ENSCCRP00000039261
>  * ENSCCRP00000020308
>  * ENSCCRP00000014142
>  * ENSCCRP00000025673
>  * ENSCCRP00000005781
> Kindly can you fix it and let me know, as we are unable to load data
> into uniparc.
> Regards,
> Rizwan Ishtiaq
> uniprot team
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