[ensembl-dev] report a bug

Alisha Aneja aaneja at ebi.ac.uk
Mon Mar 14 11:17:53 GMT 2022


Thanks for reporting this. We are looking into it.


On 2022-03-14 12:38, shenwenkang wrote:
> Hello ,i want to report a bug.
> The Ensembl's version is  Ensembl Genes 105;
> Take a species as an example : Dog (Canis lupus familiaris) ,which's
> reference genome is ROS Cfam 1.0.The bug is the gene name extract form
> Biomart is different from fasta file or gtf file.If we extract gene
> name from fasta file or gtf file, the gene name is all empty, but in
> Biomart  the gene name is not empty;
> The same bug also happen in Callorhinchus mili , f we extract gene
> name from fasta file or gtf file, most of the gene names are empty,
> but a few have gene names , but some of the empty gene name has gene
> name in Biomart,such as CBX7,CBX8,CNOT3...
> In general, in some species(probably in 70 species), the
> correspondence between gene IDs and gene names extracted from fasta
> files or gtf files is different from that in Biomart. Fatsa files
> contain a large number of genes without gene names, but there are
> genes in Biomart. name, such as Dog (Canis lupus familiaris)  and
> Callorhinchus mili.
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