[ensembl-dev] release 105 MySQL protein domain data severely truncated

[mchakiachvili]

Hello again, 

files for both homo_sapiens and mus_musculus have been regenerated anew
today, and published onto the FTP.

Please can you confirm that this resolve your issue? 

Thanks for your support. 

Marc. 

On Thu, 2022-01-20 at 17:14 +0000, mchakiachvili wrote:
> 
> Hello Eric,
> 
> Thanks for your message, we are aware of some troubles with truncated
> files for some of our current FTP.
> 
> We are correcting those when they arise. We'll surely fix those dumps
> quickly and let you know when the expected files are restored. 
> 
> Sorry for the inconvenience caused.
> 
> Marc
> 
> On Thu, 2022-01-20 at 16:24 +0000, Eric Engelhard wrote:
> > Hello Ensembl team,
> > 
> > I am working from Ensembl MySQL downloads and have discovered that
> > protein domain data from
> > ftp://ftp.ensembl.org/pub/current_mysql/homo_sapiens_core_105_38/ 
> > and
> > ftp://ftp.ensembl.org/pub/current_mysql/mus_musculus_core_105_39/ i
> > s severely truncated. This is directly impacting the Core Perl API,
> > which is only able to extract 
> > domain information for about 20 proteins. Specifically, the
> > interpro.txt.gz files for each data set are empty files. I am still
> > comparing other files against release 104 for size
> > anomalies.
> > 
> > Is this a know issue?
> > 
> > Thanks,
> > Eric
> > 
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-- 
Marc Chakiachvili

Ensembl Production Project Leader - Genomics Technology Infrastructure

European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom
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