[ensembl-dev] translation question GTG --> Methionine?
Julie Sullivan
julie.sullivan at gmail.com
Wed Mar 10 09:08:32 GMT 2021
https://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000288649;r=20:33667144-33668235;t=ENST00000678634
The first codon is GTG. I would not have expected that to be Methionine.
I looked in the text files, and there are 123 of these transcripts where
the start codon is NOT ATG but the aa is M, in Homo sapiens.
{'error': 0,
'methionine': 91434,
'GTG': 22,
'ATA': 10,
'CTG': 67,
'ACG': 8,
'TTG': 9,
'ATT': 5,
'AAC': 1,
'AAG': 1}
Why is that?
Specifically I would like a rule I can use, as my HGVSp strings are
different from VEP for this reason.
Thanks!
Julie
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