[ensembl-dev] ensembl funcgen 105 homo sapiens - mysql - detailed description of table content
Garda, Samuele
samuele.garda at charite.de
Wed Dec 15 12:01:25 GMT 2021
Dear all,
I am writing to ask whether there is any document providing extensive details on the content of the mysql tables of the regulatory build (latest version).
I am aware of the web page with the schema description:
http://www.ensembl.org/info/docs/api/funcgen/funcgen_schema.html
but ideally there should be something more fine-grained (e.g. the table "external_feature" and "mirna_target_feature" have the same description).
The tutorial on the API :
http://www.ensembl.org/info/docs/api/funcgen/regulation_tutorial.html
seems to draw information from a source with more details, e.g.: "If a Peak for the same transcription factor overlaps a MotifFeature, the MotifFeature is classed as "experimentally validated" in that Epigenome", but does not provide any further reference.
Thank you in advance.
Best regards
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20211215/9aa31b3a/attachment.html>
More information about the Dev
mailing list