[ensembl-dev] ensembl funcgen 105 homo sapiens - mysql - detailed description of table content

Garda, Samuele samuele.garda at charite.de
Wed Dec 15 12:01:25 GMT 2021


Dear all,


I am writing to ask whether there is any document providing extensive details on the content of the mysql tables of the regulatory build (latest version).


I am aware of the web page with the schema description:


http://www.ensembl.org/info/docs/api/funcgen/funcgen_schema.html


but ideally there should be something more fine-grained (e.g. the table "external_feature" and "mirna_target_feature" have the same description).


The tutorial on the API :


http://www.ensembl.org/info/docs/api/funcgen/regulation_tutorial.html


seems to draw information from a source with more details, e.g.: "If a Peak for the same transcription factor overlaps a MotifFeature, the MotifFeature is classed as "experimentally validated" in that Epigenome", but does not provide any further reference.


Thank you in advance.


Best regards

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