[ensembl-dev] JSON schema information

[Anja Thormann]

Dear Alejandro,

we describe VEP’s json output format here: https://www.ensembl.org/info/docs/tools/vep/vep_formats.html#json <https://www.ensembl.org/info/docs/tools/vep/vep_formats.html#json> I hope the description is detailed enough to help you with the tool integration. Please let me know if you have any more questions.

Kind regards,
Anja Thormann

> On 26 Oct 2020, at 14:30, Alejandro Garcia <alejandro.garcia at institutimagine.org> wrote:
> 
> Hello, 
> I'm Alejandro Garcia I'm Engineer working in Imagine Institute. 
> Currently, I'm working with the docker VEP version 101 provided. I ran the following command to obtain the output in Json format, "./vep -i  input.vcf  -e -v --cache --assembly GRCh38 --json -o output.json --force_overwrite"
> I want to use these JSONs as input to handmade tools but I'm facing problems with the JSON structure in terms of possible fields, data types... I looked for more info in VEP website but I only found a simple explanation of the schema. 
> 
> I would like to know if you have more detailed information about the JSON schema of the output with the different keys that can appear, if they are mandatory or optional, what is the value type of each field.... 
> 
> I found really interesting the option for outputting in JSON format it would be quite useful to have this information for further integration of VEP with other tools. 
> 
> Thank you very much 
> 
> Kind Regards, 
> Alejandro G.
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