[ensembl-dev] Missing latest RefSeq Transcript in MySQL of Ensembl 100 GRCh37
Wallace Ko
myko at l3-bioinfo.com
Mon Jun 8 07:54:46 BST 2020
Hi,
I have some variants on the gene ERBB2 annotated by VEP 100 (GRCh37)
transcripts NM_004448.3, which seems to be a record from the new RefSeq
release.
However, when I tried to query the transcript table in the MySQL (
ensembldb.ensembl.org:3337/homo_sapiens_otherfeatures_100_37) , there's no
result for this stable_id.
When querying all transcripts of the accession without version (select *
from transcript where stable_id like 'NM_004448%'), there are only results
for NM_004448.2.
Are the database and cache not in sync yet? Or is the database schema
changed so that I'll need to query in another way?
Regards,
Wallace Ko
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