[ensembl-dev] Biomart archive access for Ensembl Genes v90

[Thomas Maurel]

Dear Turkuler,

Thank you for spotting this issue, the archive list has now been fixed.

Apologies for any inconvenience caused,
Kind Regards,
Thomas

> On 22 Jan 2020, at 14:59, Türküler Özgümüş <turkulerc at gmail.com> wrote:
> 
> Hi,
> 
> I am listing MARTs using biomaRt::listMarts(host="http://aug2017.archive.ensembl.org <http://aug2017.archive.ensembl.org/>") on RStudio and it returns v88 MARTs while the archive for this host should be v90. Can you help me to sort out what is wrong? (Rstudio 1.2.5033 and R 3.6.1).
> 
> Kind regards,
> Turkuler Ozgumus
> 
> 
> PS.
> biomaRt::listEnsemblArchives()
>              name     date                                url version current_release
> 1  Ensembl GRCh37 Feb 2014          http://grch37.ensembl.org <http://grch37.ensembl.org/>  GRCh37                
> 2      Ensembl 99 Jan 2020 http://jan2020.archive.ensembl.org <http://jan2020.archive.ensembl.org/>      99               *
> 3      Ensembl 98 Sep 2019 http://sep2019.archive.ensembl.org <http://sep2019.archive.ensembl.org/>      98                
> 4      Ensembl 97 Jul 2019 http://jul2019.archive.ensembl.org <http://jul2019.archive.ensembl.org/>      97                
> 5      Ensembl 96 Apr 2019 http://apr2019.archive.ensembl.org <http://apr2019.archive.ensembl.org/>      96                
> 6      Ensembl 95 Jan 2019 http://jan2019.archive.ensembl.org <http://jan2019.archive.ensembl.org/>      95                
> 7      Ensembl 94 Oct 2018 http://oct2018.archive.ensembl.org <http://oct2018.archive.ensembl.org/>      94                
> 8      Ensembl 93 Jul 2018 http://jul2018.archive.ensembl.org <http://jul2018.archive.ensembl.org/>      93                
> 9      Ensembl 92 Apr 2018 http://apr2018.archive.ensembl.org <http://apr2018.archive.ensembl.org/>      92                
> 10     Ensembl 91 Dec 2017 http://dec2017.archive.ensembl.org <http://dec2017.archive.ensembl.org/>      91                
> 11     Ensembl 90 Aug 2017 http://aug2017.archive.ensembl.org <http://aug2017.archive.ensembl.org/>      90  
> 
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--
Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom

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