[ensembl-dev] taxonomy

[Emily Perry]

Hi Joseph

The taxonomy is all stored in this set of tables:
http://www.ensembl.org/info/docs/api/compara/compara_schema.html#header_2 <http://www.ensembl.org/info/docs/api/compara/compara_schema.html#header_2>

All the best

Emily

> On 2 Feb 2020, at 18:56, Joseph Steinberger <joseph.steinberger at weizmann.ac.il> wrote:
> 
> Hello Community,
> 
> I would like to go to the compara database for fungi, or any other taxon, and get an ordered list of the tree nodes, of the species tree Ensembl is using. Where is this information located in the MySQL database? 
> I do not need a specific MySQL query, but a general idea of which tables and columns are relevant.
> 
> Sincererly,
> Joseph Steinberger
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--
Dr Emily Perry (Pritchard)
Ensembl Outreach Project Leader 
(she/her)

European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory 
Wellcome Genome Campus
Hinxton
Cambridge
CB10 1SD
UK 

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