[ensembl-dev] Ensembl REST API | GET eqtl/tissue/:species/

[Ramiro Magno]

Great, thanks for the update!

On Wed, 9 Oct 2019 at 15:40, Daniel Zerbino <zerbino at ebi.ac.uk> wrote:

> Hello Ramiro,
>
> We are *this* close to a release, hopefully less that 2 weeks away.
>
> Cheers,
>
> Daniel
> On 09/10/2019 15:02, Ramiro Magno wrote:
>
> Hi Thomas,
>
> Got any update on the new eQTL server: https://www.ebi.ac.uk/eqtl ?
>
> RM
>
> On Wed, 11 Sep 2019 at 17:22, Ramiro Magno <ramiro.magno at gmail.com> wrote:
>
>> Hi Thomas,
>>
>> Thank you for your quick response. Let's wait for that new service then!
>>
>> All the best,
>> Ramiro
>>
>>
>>
>> On Wed, 11 Sep 2019 at 17:05, Thomas Juettemann <juettemann at ebi.ac.uk>
>> wrote:
>>
>>> Hello Ramiro,
>>>
>>> Thanks for your message. I agree with your points. The eQTL adaptor was
>>> the first endpoint that I created, certainly room for improvement. ;-)
>>>
>>> eQTLs are moving to a different team, and a new dedicated eQTL server is
>>> work in progress, The beta server  should be available in latest a month at
>>> this URL:
>>> https://www.ebi.ac.uk/eqtl
>>> It is currently returning 404, but will be active soon. There will be a
>>> new API for you to play with if you are interested.
>>>
>>> For that reason we will not expand these endpoints further, I hope that
>>> makes sense.
>>>
>>> Thank you for going through them in such detail, that is much
>>> appreciated.
>>> Please let me know if you have any further questions.
>>>
>>> All the best,
>>> Thomas
>>>
>>>
>>> On 11 Sep 2019, at 12:00, Ramiro Magno <ramiro.magno at gmail.com> wrote:
>>>
>>> Hi Devs,
>>>
>>> I have a few questions about the endpoint "eqtl/tissue/:species/".
>>>
>>> Q1: The doc (https://rest.ensembl.org/documentation/info/tissues <
>>> https://rest.ensembl.org/documentation/info/tissues>) indicates that
>>> there are no required parameters but that is a mistake, right? It always
>>> needs the species name, correct?
>>>
>>> Q2: Can I use this endpoint with other species than human? I tried with
>>> ovis_aries and capra_hircus but got a funny error: "error: No EQTL adaptor
>>> available".
>>>
>>> Q3: About the json output, the json is a list key/value pairs, with
>>> tissue name being the key and value being (always?) 1. Can the value in any
>>> circumstance be different from 1? If not, may I ask why this specific
>>> design choice? Why not simply return an array of tissue names?
>>>
>>> As always, many thanks in advance, Ramiro Magno
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>>
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