[ensembl-dev] Ensembl 96 and Ensembl Genomes 43 are out!

[Kurt Wheeler]

Hi Nick,

Thanks for fixing this!!! I must have gotten really lucky cause I just
decided to try it randomly.

Best,

- Kurt

On Tue, May 21, 2019 at 3:30 AM Nick Langridge <nickl at ebi.ac.uk> wrote:

> Hi Kurt,
>
> Indeed it has now been fixed - it was done late yesterday and I didn't get
> a chance to announce it. Sorry for any inconvnience caused.
>
> The issue arose out teething problems with a new release process and we
> hope to avoid a recurrance in the future.
>
> Thanks for your patience.
>
> Best regards,
> Nick
> On 20/05/2019 19:06, Kurt Wheeler wrote:
>
> If anyone else was affected by this bug it looks like it's been fixed now.
>
> On Wed, May 15, 2019 at 10:40 AM Kurt Wheeler <kurt.wheeler91 at gmail.com>
> wrote:
>
>> Hi Kieron,
>>
>> Is there any way we can be alerted when this issue is corrected? Maybe an
>> issue or bug report we can subscribe to?
>>
>> We have hardcoded version 43 into our code and this will cause our code
>> to break again when version 44 is released. Once this issue is resolved we
>> can go back to using the response from the REST API to determine the
>> version so that our code handles the release of version 44 seamlessly.
>>
>> Thanks,
>>
>> - Kurt
>>
>> On Wed, May 15, 2019 at 5:23 AM Kieron Taylor <ktaylor at ebi.ac.uk> wrote:
>>
>>> Hi Kurt,
>>>
>>> It looks like a post-release hot fix has brought in some extra metadata
>>> that was intended for the future. There is no impact on the biological
>>> data, only the reported version is incorrect. The webteam is aware and will
>>> sort it out as soon as possible.
>>>
>>> Thank you for bringing up the issue, regards,
>>>
>>> Kieron
>>>
>>>
>>> Kieron Taylor PhD.
>>> Ensembl Developer
>>>
>>> EMBL, European Bioinformatics Institute
>>>
>>>
>>>
>>>
>>>
>>>
>>> > On 14 May 2019, at 17:36, Kurt Wheeler <kurt.wheeler91 at gmail.com>
>>> wrote:
>>> >
>>> > Hey are these still the latest versions?
>>> https://rest.ensembl.org/documentation/info/eg_version is returning:
>>> >
>>> > {
>>> >   "
>>> > version": 44
>>> > }
>>> >
>>> > Which seems to be breaking some code because this leads us to try to
>>> pull files from URLs such as
>>> ftp://ftp.ensemblgenomes.org/pub/metazoa/release-44/fasta/anopheles_gambiae/dna/
>>> instead of
>>> ftp://ftp.ensemblgenomes.org/pub/metazoa/release-43/fasta/anopheles_gambiae/dna/
>>> .
>>> >
>>> > Thanks!
>>> >
>>> > On Tue, Apr 9, 2019 at 8:01 AM Astrid Gall <agall at ebi.ac.uk> wrote:
>>> > Dear all
>>> >
>>> > We are pleased to announce that the latest Ensembl and Ensembl Genomes
>>> updates have been released:
>>> > http://www.ensembl.org/
>>> > http://ensemblgenomes.org
>>> >
>>> >
>>> > Highlights of this release include:
>>> >       • First-pass full annotation of the mouse genome (GENCODE M21
>>> gene set)
>>> >       • Release of Ensembl-RefSeq MANE Select v0.5 transcripts
>>> >       • Update to GENCODE 30 for human
>>> >       • Joint REST server for Ensembl and Ensembl Genomes
>>> >       • Changes to FTP directory layout
>>> >       • New genomes: 19 birds, five reptiles and 12 mammals
>>> >       • New interface for configuration of regulation tracks
>>> >
>>> >
>>> > The release blog post with all news can be viewed here:
>>> >
>>> http://www.ensembl.info/2019/04/09/ensembl-96-and-ensembl-genomes-43-are-out/
>>> >
>>> > For the latest news from the Ensembl project visit our blog at:
>>> > http://www.ensembl.info
>>> >
>>> > The release webinar is planned for Wednesday 17th April 2019 at 16:00
>>> BST. Please register using the following URL:
>>> > https://attendee.gototraining.com/r/8260823671959775489
>>> > Registration is free.
>>> >
>>> > Best regards,
>>> >
>>> > Astrid
>>> > On behalf of the Ensembl team
>>> > --
>>> > Dr Astrid Gall
>>> > Ensembl Outreach Officer
>>> > European Molecular Biology Laboratory - European Bioinformatics
>>> Institute (EMBL-EBI)
>>> > Wellcome Genome Campus
>>> > Hinxton, Cambridge
>>> > CB10 1SD
>>> > United Kingdom
>>> >
>>> >
>>> >
>>> >
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>>
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