[ensembl-dev] Ensembl 96 and Ensembl Genomes 43 are out!

[Nick Langridge]

Hi Kurt,

Indeed it has now been fixed - it was done late yesterday and I didn't 
get a chance to announce it. Sorry for any inconvnience caused.

The issue arose out teething problems with a new release process and we 
hope to avoid a recurrance in the future.

Thanks for your patience.

Best regards,
Nick

On 20/05/2019 19:06, Kurt Wheeler wrote:
> If anyone else was affected by this bug it looks like it's been fixed now.
>
> On Wed, May 15, 2019 at 10:40 AM Kurt Wheeler 
> <kurt.wheeler91 at gmail.com <mailto:kurt.wheeler91 at gmail.com>> wrote:
>
>     Hi Kieron,
>
>     Is there any way we can be alerted when this issue is corrected?
>     Maybe an issue or bug report we can subscribe to?
>
>     We have hardcoded version 43 into our code and this will cause our
>     code to break again when version 44 is released. Once this issue
>     is resolved we can go back to using the response from the REST API
>     to determine the version so that our code handles the release of
>     version 44 seamlessly.
>
>     Thanks,
>
>     - Kurt
>
>     On Wed, May 15, 2019 at 5:23 AM Kieron Taylor <ktaylor at ebi.ac.uk
>     <mailto:ktaylor at ebi.ac.uk>> wrote:
>
>         Hi Kurt,
>
>         It looks like a post-release hot fix has brought in some extra
>         metadata that was intended for the future. There is no impact
>         on the biological data, only the reported version is
>         incorrect. The webteam is aware and will sort it out as soon
>         as possible.
>
>         Thank you for bringing up the issue, regards,
>
>         Kieron
>
>
>         Kieron Taylor PhD.
>         Ensembl Developer
>
>         EMBL, European Bioinformatics Institute
>
>
>
>
>
>
>         > On 14 May 2019, at 17:36, Kurt Wheeler
>         <kurt.wheeler91 at gmail.com <mailto:kurt.wheeler91 at gmail.com>>
>         wrote:
>         >
>         > Hey are these still the latest versions?
>         https://rest.ensembl.org/documentation/info/eg_version is
>         returning:
>         >
>         > {
>         >   "
>         > version": 44
>         > }
>         >
>         > Which seems to be breaking some code because this leads us
>         to try to pull files from URLs such as
>         ftp://ftp.ensemblgenomes.org/pub/metazoa/release-44/fasta/anopheles_gambiae/dna/
>         instead of
>         ftp://ftp.ensemblgenomes.org/pub/metazoa/release-43/fasta/anopheles_gambiae/dna/.
>         >
>         > Thanks!
>         >
>         > On Tue, Apr 9, 2019 at 8:01 AM Astrid Gall <agall at ebi.ac.uk
>         <mailto:agall at ebi.ac.uk>> wrote:
>         > Dear all
>         >
>         > We are pleased to announce that the latest Ensembl and
>         Ensembl Genomes updates have been released:
>         > http://www.ensembl.org/
>         > http://ensemblgenomes.org
>         >
>         >
>         > Highlights of this release include:
>         >       • First-pass full annotation of the mouse genome
>         (GENCODE M21 gene set)
>         >       • Release of Ensembl-RefSeq MANE Select v0.5 transcripts
>         >       • Update to GENCODE 30 for human
>         >       • Joint REST server for Ensembl and Ensembl Genomes
>         >       • Changes to FTP directory layout
>         >       • New genomes: 19 birds, five reptiles and 12 mammals
>         >       • New interface for configuration of regulation tracks
>         >
>         >
>         > The release blog post with all news can be viewed here:
>         >
>         http://www.ensembl.info/2019/04/09/ensembl-96-and-ensembl-genomes-43-are-out/
>         >
>         > For the latest news from the Ensembl project visit our blog at:
>         > http://www.ensembl.info
>         >
>         > The release webinar is planned for Wednesday 17th April 2019
>         at 16:00 BST. Please register using the following URL:
>         > https://attendee.gototraining.com/r/8260823671959775489
>         > Registration is free.
>         >
>         > Best regards,
>         >
>         > Astrid
>         > On behalf of the Ensembl team
>         > --
>         > Dr Astrid Gall
>         > Ensembl Outreach Officer
>         > European Molecular Biology Laboratory - European
>         Bioinformatics Institute (EMBL-EBI)
>         > Wellcome Genome Campus
>         > Hinxton, Cambridge
>         > CB10 1SD
>         > United Kingdom
>         >
>         >
>         >
>         >
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