[ensembl-dev] Ensembl 96 and Ensembl Genomes 43 are out!

[Kurt Wheeler]

If anyone else was affected by this bug it looks like it's been fixed now.

On Wed, May 15, 2019 at 10:40 AM Kurt Wheeler <kurt.wheeler91 at gmail.com>
wrote:

> Hi Kieron,
>
> Is there any way we can be alerted when this issue is corrected? Maybe an
> issue or bug report we can subscribe to?
>
> We have hardcoded version 43 into our code and this will cause our code to
> break again when version 44 is released. Once this issue is resolved we can
> go back to using the response from the REST API to determine the version so
> that our code handles the release of version 44 seamlessly.
>
> Thanks,
>
> - Kurt
>
> On Wed, May 15, 2019 at 5:23 AM Kieron Taylor <ktaylor at ebi.ac.uk> wrote:
>
>> Hi Kurt,
>>
>> It looks like a post-release hot fix has brought in some extra metadata
>> that was intended for the future. There is no impact on the biological
>> data, only the reported version is incorrect. The webteam is aware and will
>> sort it out as soon as possible.
>>
>> Thank you for bringing up the issue, regards,
>>
>> Kieron
>>
>>
>> Kieron Taylor PhD.
>> Ensembl Developer
>>
>> EMBL, European Bioinformatics Institute
>>
>>
>>
>>
>>
>>
>> > On 14 May 2019, at 17:36, Kurt Wheeler <kurt.wheeler91 at gmail.com>
>> wrote:
>> >
>> > Hey are these still the latest versions?
>> https://rest.ensembl.org/documentation/info/eg_version is returning:
>> >
>> > {
>> >   "
>> > version": 44
>> > }
>> >
>> > Which seems to be breaking some code because this leads us to try to
>> pull files from URLs such as
>> ftp://ftp.ensemblgenomes.org/pub/metazoa/release-44/fasta/anopheles_gambiae/dna/
>> instead of
>> ftp://ftp.ensemblgenomes.org/pub/metazoa/release-43/fasta/anopheles_gambiae/dna/
>> .
>> >
>> > Thanks!
>> >
>> > On Tue, Apr 9, 2019 at 8:01 AM Astrid Gall <agall at ebi.ac.uk> wrote:
>> > Dear all
>> >
>> > We are pleased to announce that the latest Ensembl and Ensembl Genomes
>> updates have been released:
>> > http://www.ensembl.org/
>> > http://ensemblgenomes.org
>> >
>> >
>> > Highlights of this release include:
>> >       • First-pass full annotation of the mouse genome (GENCODE M21
>> gene set)
>> >       • Release of Ensembl-RefSeq MANE Select v0.5 transcripts
>> >       • Update to GENCODE 30 for human
>> >       • Joint REST server for Ensembl and Ensembl Genomes
>> >       • Changes to FTP directory layout
>> >       • New genomes: 19 birds, five reptiles and 12 mammals
>> >       • New interface for configuration of regulation tracks
>> >
>> >
>> > The release blog post with all news can be viewed here:
>> >
>> http://www.ensembl.info/2019/04/09/ensembl-96-and-ensembl-genomes-43-are-out/
>> >
>> > For the latest news from the Ensembl project visit our blog at:
>> > http://www.ensembl.info
>> >
>> > The release webinar is planned for Wednesday 17th April 2019 at 16:00
>> BST. Please register using the following URL:
>> > https://attendee.gototraining.com/r/8260823671959775489
>> > Registration is free.
>> >
>> > Best regards,
>> >
>> > Astrid
>> > On behalf of the Ensembl team
>> > --
>> > Dr Astrid Gall
>> > Ensembl Outreach Officer
>> > European Molecular Biology Laboratory - European Bioinformatics
>> Institute (EMBL-EBI)
>> > Wellcome Genome Campus
>> > Hinxton, Cambridge
>> > CB10 1SD
>> > United Kingdom
>> >
>> >
>> >
>> >
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>>
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>
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