[ensembl-dev] Ensembl REST API | Documentation for returned JSON objects
Brandon Walts
bwalts at ebi.ac.uk
Mon Aug 5 11:57:39 BST 2019
Hi Ramiro
Unfortunately, this is not yet fully documented.
To answer your questions, yes, 1 means current.
There appears to be a bug in some of the values for "peptide" where null
is returned even for proteins. Thank you for bringing this to our
attention and we will look into it.
possible_replacement returns a list of "successors" for the ID, in other
words a list of stable IDs up to the current stable ID that have
replaced a retired stable ID. For example,
http://rest.ensembl.org/archive/id/ENSG00000263255?content-type=text/plain
- ENSG00000263255 having been retired and superceeded by ENSG00000256229
Best
-Brandon
On 30/07/2019 16:10, Ramiro Magno wrote:
> Hi Devs,
>
> Is there documentation on the variables returned in JSON responses?
>
> For example:
>
> http://rest.ensembl.org/documentation/info/archive_id_get
>
> Returns a JSON object of 9 variables:
>
> - id
> - latest
> - type
> - version
> - release
> - is_current
> - assembly
> - peptide
> - possible_replacement
>
> While some of them self-explanatory, others it is not obvious to me
> what the exact meaning and what kind of values I might encounter. For
> instance, "is_current", seems to be coded as "1" or "0"? Where "1"
> means current? Not sure what "peptide" means either, most examples I
> tried gives NULL; not sure what "possible_replacement" means too.
>
> Many thanks, RM
>
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