[ensembl-dev] Dmd gene_variation_table_not work

Nick Langridge nickl at ebi.ac.uk
Tue Oct 9 12:32:42 BST 2018


Hi John,

Thanks for reporting this and sorry you're having problems.

It looks like the large number of variants for this gene is causing a 
problem for the table viewer.

At a glance I can't see exactly where the problem lies so we'll need to 
investigate further and get back to you.

In the meantime, and depending on what you are trying to do, you may be 
able to find the information you need via the Ensembl REST server 
http://rest.ensembl.org

E.g. to fetch all variants for DMD
curl -o result.json 
'http://rest.ensembl.org/overlap/id/ENSG00000198947?feature=variation' 
-H 'Content-type:application/json'

It's quite a large result (~100mb) so it may require some programmatic 
parsing to extract what you need.

I hope that helps.

Best regards,
Nick

Ensembl web team
EMBL-EBI

On 09/10/2018 11:08, John paschos wrote:
> Hellow,
> I would like to inform you that when i search for dmd gene and go to 
> the website of this gene ,i tried to see the variation table in 
> genetic variation category but fails to bring  the table and display 
> the above messenge:
>
>
>       Ajax error
>
> Sorry, the page request 
> "/Homo_sapiens/Component/Gene/Variation_Gene/Table/snptable?db=core;g=ENSG00000198947;r=X:31097677-33339441;time=1539079508568.568" 
> failed to loaded
>
>
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20181009/2eee4bcc/attachment.html>


More information about the Dev mailing list