[ensembl-dev] Dmd gene_variation_table_not work
Nick Langridge
nickl at ebi.ac.uk
Tue Oct 9 12:32:42 BST 2018
Hi John,
Thanks for reporting this and sorry you're having problems.
It looks like the large number of variants for this gene is causing a
problem for the table viewer.
At a glance I can't see exactly where the problem lies so we'll need to
investigate further and get back to you.
In the meantime, and depending on what you are trying to do, you may be
able to find the information you need via the Ensembl REST server
http://rest.ensembl.org
E.g. to fetch all variants for DMD
curl -o result.json
'http://rest.ensembl.org/overlap/id/ENSG00000198947?feature=variation'
-H 'Content-type:application/json'
It's quite a large result (~100mb) so it may require some programmatic
parsing to extract what you need.
I hope that helps.
Best regards,
Nick
Ensembl web team
EMBL-EBI
On 09/10/2018 11:08, John paschos wrote:
> Hellow,
> I would like to inform you that when i search for dmd gene and go to
> the website of this gene ,i tried to see the variation table in
> genetic variation category but fails to bring the table and display
> the above messenge:
>
>
> Ajax error
>
> Sorry, the page request
> "/Homo_sapiens/Component/Gene/Variation_Gene/Table/snptable?db=core;g=ENSG00000198947;r=X:31097677-33339441;time=1539079508568.568"
> failed to loaded
>
>
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