[ensembl-dev] Wrong ancestral allele?

[Fin Swimmer]

Hello Anja,

thanks for your quick reply. Good to know, I haved read "ancestral" as 
"reference allele".

So to get the reference allele using variation endpoint of the REST-API 
I have to parse "allele_string"? Or are there other ways?

fin swimmer

Am 2018-07-26 11:55, schrieb Anja Thormann:
> Hi,
> 
> most other primates have an A at that genomic location:
> http://www.ensembl.org/Homo_sapiens/Variation/Compara_Alignments?align=1141&db=core&r=7%3A117591144-117592144&v=rs184957926&vdb=variation&vf=39493132
> [1]
> 
> HTH,
> Anja
> 
>> On 26 Jul 2018, at 10:52, Fin Swimmer <ensembl at need-login.de> wrote:
>> 
>> Hello,
>> 
>> why is the ancestral allel for rs184957926 reported as A not as C?
>> See:
>> 
> http://www.ensembl.org/Homo_sapiens/Variation/Population?r=7:117591144-117592144;v=rs184957926;vdb=variation;vf=39493132
>> 
>> fin swimmer
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> 
> 
> 
> Links:
> ------
> [1]
> http://www.ensembl.org/Homo_sapiens/Variation/Compara_Alignments?align=1141&db=core&r=7:117591144-117592144&v=rs184957926&vdb=variation&vf=39493132
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