[ensembl-dev] New VEP endpoint
Andrew Parton
aparton at ebi.ac.uk
Wed Jul 18 10:28:25 BST 2018
Hi,
Thank you for your query. Population data can be taken form the REST API using the /variation/species/ID endpoint.
For example, for the rsID contained in your email, you can access population data with the URL http://rest.ensembl.org/variation/human/rs58651353?content-type=application/json;pops=1 <http://rest.ensembl.org/variation/human/rs58651353?content-type=application/json;pops=1>
If there’s anything else that we can do to help, please don’t hesitate to ask.
Kind Regards,
Andrew
> On 18 Jul 2018, at 10:11, Wolf Beat <Beat.Wolf at hefr.ch> wrote:
>
> Hello,
>
>
> I was wondering, with the new VEP endpoint is there a way to get the "ALL" population from 100 genomes, gnomad etc.?
>
> Its also unclear to me if the gnomad exome or genome frequency is used.
>
>
> In short, is there a way to get the same information that is present on the webpage under population genetics (like http://www.ensembl.org/Homo_sapiens/Variation/Population?db=core;r=2:178751544-178752544;v=rs58651353;vdb=variation;vf=11676771#1000genomesprojectphase3_anchor ) out of the ensembl REST endpoint? Right now it seems that there is much more information on the webpage.
>
>
> To be clear, i don't actually need all the information on the webpage, all i actually need is the "ALL" population. But the fact that the webpage and the vep rest endpoint does not have the same information makes me think that something is missing.
>
>
> Kind regards
>
>
> Beat Wolf
> _______________________________________________
> Dev mailing list Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20180718/a612f1d7/attachment.html>
More information about the Dev
mailing list