[ensembl-dev] Ensembl Mirror Install - BioMart Installation

[Rehaman]

Dear Matthew,

Thanks a lot for your answer.

We are still in installation process of private ensemble server. We will
post if we have any further issues.

Thanks & Regards
Fazulur Rehaman

On Fri, Jan 12, 2018 at 4:14 PM, Matthew Laird <lairdm at ebi.ac.uk> wrote:

> Hi Fazulur,
>
> I've raised the issue with the appropriate teams that yes we have local
> installation instructions but we don't have release to release upgrade
> instructions. To upgrade from one release to the next:
>
> - download and install the latest database versions of the species you
> want in your local installation, as per the installation instructions
> - for each of the ensembl* git repositories, in the directory for that
> repository run: git fetch; git checkout release/91 (where you replace the
> 91 with whichever new version in the future)
> - delete everything in the conf/packed directory for the web code
> - restart the web server, as per the installation instructions
>
> If you have any trouble with this, please let us know and we'll try to
> assist you.
>
> Cheers.
>
>
> On 11/01/18 06:47, Rehaman wrote:
>
> Dear Ensembl team,
>
> Thanks a lot for quick response.
>
> I have one more question.
> Could you please let me know how to update our private server for next
> Ensembl's release.
>
> Thanks & Regards
> Fazulur Rehaman
>
> Thanks & Regards
> Fazulur Rehaman
>
> On Wed, Jan 10, 2018 at 4:40 PM, Matthew Laird <lairdm at ebi.ac.uk> wrote:
>
>> Hello Rehaman,
>>
>> Unfortunately I think you've misunderstood what the installation
>> instructions are trying to say. We no longer recommend the local
>> installation of BioMart as part of a local mirror, and when the
>> documentation says to link to a public BioMart, it means to run your
>> queries against a public BioMart and Ensembl database. There isn't a way to
>> have our public BioMart instances talk to your private server. If you need
>> to do large queries against a local Ensembl mirror, you're better off using
>> the API in that case.
>>
>> Please let us know if you have any further questions. Cheers.
>>
>>
>> On 10/01/18 10:46, Rehaman wrote:
>>
>> Dear Team,
>>
>> We are configuring Ensembl mirror locally in our environment as per
>> instructions.
>> Now we need to install BioMart. In Documentation, It is saying that it is
>> not recommended to install.
>>
>> Could you please let us know the process of linking public BioMart.to
>> ensembl local server?
>>
>> Thanks in advance
>> Rehaman
>>
>>
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>>
>>
>
>
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